Publications

* = Franklin lab student, + = other student

Longenecker K, Langston R, Mamesah J, Natan Y, Pattinasarany M, Radjab AW, Romdon A, Ruli F, Simanjuntak P+, Sinaga FL+, Limmon GV, Franklin EC (2024). Errors in estimating reproductive parameters with macroscopic methods: a case study on the protogynous blacktip grouper Epinephelus fasciatus (Forsskål 1775). Journal of Fish Biology 105(4): 1256–1267.

Cite DOI

Möhlenkamp P+, Franklin EC, McManus MA (2024). Nuʻupia Ponds’ Water Circulation Characteristics: Exploring Water Exchange and Residence Time for Marine Ecosystem Management. Sustainability 16(16): 7159.

Cite DOI

Franklin EC, Platt MT*, Andrade P (2024). Increased occurrence of the rare golden color morph of Pacific chub Kyphosus sandwicensis in a no-take marine reserve. Journal of Fish Biology 104: 1237–1240.

Cite DOI

Franklin EC (2023). Western Pacific Stock Assessment Review: Stock Assessment of American Samoa Bottomfish, 2023, Panel Summary Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 5 pp.

Cite

Franklin EC (2023). Western Pacific Stock Assessment Review: Stock Assessment of American Samoa Bottomfish, 2023, Individual Reviewer Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 30 pp.

Cite

Winans WR+, Chen Q, Qiang Y, Franklin EC (2023). Large-area automatic detection of shoreline stranded marine debris using deep learning. International Journal of Applied Earth Observation and Geoinformation 124: 103515.

Cite DOI

Purwanto, Franklin EC, Mardiani SR, White AT (2023). Multiple-goal bioeconomic programming to address conflicting management objectives in Indonesian small pelagic fisheries. Marine Policy 150: 105519.

Cite DOI

Carlson KM, Mora C, Xu J+, Setter RO+, Harangody M+, Franklin EC, Kantar MB, Lucas M, Menzo ZM+, Spirandelli D, Schanzenbach D, Warr CC, Wong AE+, Businger S (2022). Global rainbow distribution under current and future climates. Global Environmental Change 77: 102604.

Cite DOI

Setter RO+, Franklin EC, Mora C (2022). Co-occurring anthropogenic stressors reduce the timeframe of environmental viability for the world’s coral reefs. PLoS Biology 20: e3001821.

Cite DOI

Barkley YM*, Sakai T, Oleson EM, Franklin EC (2022). Examining distribution patterns of foraging and non-foraging sperm whales in Hawaiian waters using visual and passive acoustic data. Frontiers in Remote Sensing 3: 940186.

Cite DOI

Akiona AK*, Popp BN, Toonen RJ, Siple MC, Kotubetey K, Kawelo H, Franklin EC (2022). Predatory fish diets shift toward an invasive mullet in a traditional Hawaiian aquaculture system. Aquaculture, Fish and Fisheries 2: 307-320.

Cite DOI

Mora C, McKenzie T, Gaw IM+, Dean JM+, von Hammerstein H+, Knudson TA+, Setter RO+, Smith CZ+, Webster KM+, Patz JA, Franklin EC (2022). Over half of known human pathogenic diseases can be aggravated by climate change. Nature Climate Change 12: 869-875.

Cite DOI

Nichols RS*, DeMartini EE, Franklin EC (2022). No butts about it: using urogenital disparity in a deep water snapper, Etelis carbunculus (Lutjanidae), for field based sexual identification. Journal of Fish Biology 101: 1092-1097

Cite DOI

Andrade P, Morishige K, Mau A, Kapono L, Franklin EC (2022). Re-imagining contemporary conservation to support ʻĀina Momona: Productive and thriving communities of people, place, and natural resources. Parks Stewardship Forum 38: 186–198.

Cite DOI

Purwanto, Franklin EC, Mardiani SR, White AT (2022). Stock assessment and overexploitation risk of small pelagic fish in Fisheries Management Area 715 of Indonesia. Asian Fisheries Science 35: 76-89.

Cite DOI

Jaya I, Satria F, Wudianto, Nugroho D, Sadiyah L, Buchary EA, White AT, Franklin EC, Courtney CA, Green G, Green S (2022). Are the working principles of fisheries management at work in Indonesia? Marine Policy 140: 105047.

Cite DOI

Longenecker K, Franklin EC, Hill-Lewenilovo R+, Lalavanua W, Langston R, Mangubhai, Piovano S (2022). Many immature individuals and largest size classes lacked females from three coral reef fishes (Actinopterygii) in Fiji market surveys: Implications for fishery management. Acta Ichthyologica et Piscatoria 52: 53-65.

Cite DOI

Johannsen T+, Franklin EC, Hunter CL (2022). A short-term winner? Dramatic increases in the population of mushroom coral Lobactis scutaria (Anthozoa: Fungiidae) in Kaneohe Bay, Hawaii from 2000 to 2018. Pacific Science 76: 79-93.

Cite DOI

Counsell CWW+, Coleman RR+, Lal SS+, Bowen BW, Franklin EC, Neuheimer AB, Powell BS, Toonen RJ, Donahue MJ, Hixon MA, McManus MA (2022). Interdisciplinary analysis of larval dispersal for a coral reef fish: opening the black box. Marine Ecology Progress Series 684: 117-132.

Cite DOI

Limmon GV, Longenecker KL, Langston R, Franklin EC (2022). Capacity development in reproductive life history studies of tropical fishes in Ambon, Maluku, Indonesia for data-limited fisheries. Marine Policy 136: 104948.

Cite DOI

Hixon MA, Bowen BW, Coleman RR+, Counsell CW+, Donahue MJ, Franklin EC, Kittinger JN, McManus MA, Toonen RJ (2022). Fish flow: following fisheries from spawning to supper. Frontiers in Ecology and the Environment 20: 247-254.

Cite DOI

Franklin EC, Longenecker K, Langston R (2021). Specialist Training in Histology-based Reproductive Analysis of Tropical Fishes at Pattimura University, Ambon, Indonesia. Report prepared by the University of Hawaii at Manoa (UHM) for Tetra Tech’s Supplemental Technical Assistance to the USAID SEA Project and Walton Family Foundation. 26 pp.

Cite

Franklin EC (2021). Stock Assessment Review Report for the Small Pelagic Fishery in FMA 715, Indonesia. Report prepared by the University of Hawaii at Manoa (UHM) for Tetra Tech’s Supplemental Technical Assistance to the USAID SEA Project and Walton Family Foundation. 39 pp.

Cite

Mau A+, Franklin EC, Huss GR, Nagashima K, Nicodemus P, Valdez A, Bingham J-P (2021). Near-daily reconstruction of tropical intertidal SST from limpet shells to infer their growth rates. Nature Communications Earth & Environment 2, 171.

Cite DOI

Carlson B, Awai M, Saunders WB, Franklin EC (2021). Nautilus belauensis population demographics and trap yields in Palau were similar between surveys in 1982 and 2015. Marine Ecology Progress Series 670: 239-245.

Cite DOI

Gill A+, Franklin EC, Donaldson TJ (2021). Fore reef location influences spawning success and egg predation in lek-like mating territories of the bird wrasse Gomphosus varius. Journal of Fish Biology 104: 451-461.

Cite DOI

Altman-Kurosaki NT*, Smith CM, Franklin EC (2021). Oahu's marine protected areas have limited success in protecting coral reef herbivore functional assemblages. Coral Reefs 40: 305-322.

Cite DOI

Scherrer SR+, Kobayashi DR, Weng KC, Okamoto HY, Oishi FG, Franklin EC (2021). Estimation of growth parameters integrating tag-recapture, length-frequency, and direct aging data using likelihood and Bayesian methods for the tropical deepwater snapper Pristipomoides filamentous in Hawaii. Fisheries Research 233: 105753.

Cite DOI

Franklin EC, Indrajaya, Wudianto, Nugroho D, Satria F, Sadiyah L (2020). Stock Assessment Review Protocol for Indonesian Fisheries. Report prepared by the University of Hawaii at Manoa (UHM) for Tetra Tech’s Supplemental Technical Assistance to the USAID SEA Project and Walton Family Foundation. 11 pp.

Cite

Franklin EC (2020). US-Indonesia Stock Assessment Review Peer-to-Peer Exchange Report. Report prepared by the University of Hawaii at Manoa (UHM) for Tetra Tech’s Supplemental Technical Assistance to the USAID SEA Project and Walton Family Foundation. 56 pp.

Cite

Franklin EC (2020). Western Pacific Stock Assessment Review: Stock Assessment of Uku (Aprion virescens) in Hawaii, 2020, Panel Summary Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 6 pp.

Cite

Franklin EC (2020). Western Pacific Stock Assessment Review: Stock Assessment of Uku (Aprion virescens) in Hawaii, 2020, Individual Reviewer Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 22 pp.

Cite

Franklin EC (2020). Western Pacific Stock Assessment Review: Stock Assessment Update for the Main Hawaiian Islands Deep 7 Bottomfish Complex in 2021, with Catch Projections through 2025, Panel Summary Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 6 pp.

Cite

Franklin EC (2020). Western Pacific Stock Assessment Review: Stock Assessment Update for the Main Hawaiian Islands Deep 7 Bottomfish Complex in 2021, with Catch Projections through 2025, Individual Reviewer Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 22 pp.

Cite

Longenecker K, Langston R, Franklin EC (2020). Standard operating procedure for histology-based rapid reproductive analysis of tropical fish. Technical Report for Walton Family Foundation.

Cite DOI

Longenecker K, Langston R, Gill A+, Kelokelo M+, Donaldson TJ, Franklin EC (2020). Rapid reproductive analysis and weight-length relation of the humpnose big-eye bream Monotaxis grandoculis (Actinopterygii: Perciformes: Lethrinidae) from Micronesia with implications for fisheries. Acta Ichthyologica et Piscatoria 50(4): 493–500.

Cite DOI

Winter KB, Rii YM, Reppun FAWL, Hintzen KD, Alegado R, Bowen BW, Bremer LL, Coffman M, Deenik JL, Donahue MJ, Falinski FA, Frank K, Franklin EC, Kurashima N, Lincoln NK, Madin E, McManus MA, Nelson CE, Okano R, Olegario A, Pascua P, Oleson KLL, Price MR, Rivera MAJ, Rodgers KS, Ticktin T, Sabine C, Smith CM, Hewett A, Kaluhiwa R, Cypher M, Thomas B, Leong J, Kekuewa K, Tanimoto J, Kukea-Shultz K, Kawelo H, Kotubetey K, Neilson B, Lee T, Toonen RJ (2020). Collaborative research to inform adaptive co-management: A framework for the Heʻeia National Estuarine Research Reserve. Ecology and Society 25(4): 15.

Cite DOI

Winter KB, Lincoln NK, Berkes F, Kawelo H, Kotubetey K, Kukea-Shultz K, Alegado R, Kurashima N, Frank K, Pascua P, Rii Y, Reppun F, Knapp I, McClatchey W, Ticktin T, Smith C, Franklin EC, Oleson K, Price M, McManus M, Donahue M, Rodgers K, Bowen B, Nelson C, Beilson B, Thomas B, Leong J-A, Madin E, Rivera MA, Falinski K, Bremer L, Deenik J, Gon III S, Okano R, Olegario A, Toonen R (2020). Eco-mimicry in indigenous resource management: optimizing ecosystem services to achieve resource abundance in Hawai'i. Ecology and Society 25: 26.

Cite DOI

Oyafuso ZS*, Leung PS, Franklin EC (2020). Evaluating biological and socioeconomic tradeoffs of marine reserve planning via a flexible integer linear programming approach. Biological Conservation 241: 108319.

Cite DOI

Longenecker K, Franklin EC, Hill-Lewenilovo R, Lalavanua W, Langston R, Mangubhai S, Naisilisili W, Piovano S, Tomanitoakula J (2019). Histology-based estimates of reproductive size and sexual pattern for four heavily exploited Fijian reef fishes. Report to National Geographic. 15 pp.

Cite

Franklin EC, Gray AE, Mundy BC (2019). Three new records of coastal fishes in the Hawaiian Islands. Journal of the Ocean Science Foundation 33: 99–106.

Cite DOI

Barkley YM*, Oleson EM, Oswald JN, Franklin EC (2019). Whistle classification of sympatric false killer whale populations in Hawaiian waters yields low accuracy rates. Frontiers in Marine Science 6: 645.

Cite DOI

Mora C, Rollins R+, Taladay K+, Kantar M, Chock M+, Shimada M+, Franklin EC (2019). Mora et al. reply. Nature Climate Change 9: 658-659.

Cite DOI

Darling ES, McClanahan TR, Maina J, Gurney G, Graham NAJ, Januchowski-Hartley F, Cinner JE, Mora C, Hicks CC, Maire E, Puotinen M, Skirving WJ, Adjeroud M, Ahmadia G, Arthur R, Bauman AG, Beger M, Berumen ML, Bigot L, Bouwmeester, Brenier, Bridge T, Brown E, Campbell SJ, Cannon S, Cauvin B, Chen AC, Claudet J, Denis V, Donner S, Estradivari, Fadli N, Feary DA, Fenner D, Fox H, Franklin EC, Friedlander A, Gilmour J, Goiran C, Guest J, Hobbs, J-PA, Hoey AS, Houk P, Johnson S, Jupiter S, Kayal M, Kuo C-Y, Lamb J, Lee MAC, Low J, Muthiga N, Muttaqin, Nand Y, Nash KL, Nedlic O, Pandolfi JM, Pardede S, Patankar V, Penin L, Ribas-Deulofeu L, Richards Z, Roberts TE, Rodgers KS, Safuari CDM, Sala E, Shedrawi G, Sin TM, Smallhorn-West P, Smith JE, Sommer B, Steinberg PD, Sutthacheep M, Tan CHJ, Williams GJ, Wilson S, Yeemin T, Bruno JF, Fortin MJ, Krkosek M, Mouillot D (2019). Social-environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology and Evolution 3: 1341–1350.

Cite DOI

Randall JE, Gray A, Franklin EC, Mundy BC, McCosker JE (2019). Five new records of fishes for the Hawaiian Islands. Journal of Ocean Science Foundation 33: 28-43. doi: 10.5281/zenodo.3255089

Cite DOI

Johnson GB+, Taylor BM, Robbins WD, Franklin EC, Toonen R, Bowen BW, Choat JH (2019). Diversity and structure of parrotfish assemblages across the northern Great Barrier Reef. Diversity 11(1):14. doi: 10.3390/d11010014

Cite DOI

Franklin EC (2018). Western Pacific Stock Assessment Review: Benchmark Review of the Stock Assessment of the Coral Reef Fishes of Guam, 2017, Consensus Panel Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 8 pp.

Cite

Franklin EC (2018). Western Pacific Stock Assessment Review: Benchmark Review of the Stock Assessment of the Coral Reef Fishes of Guam, 2017, Individual Reviewer Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 27 pp.

Cite

Oyafuso ZS*, Leung PS, Franklin EC (2018). Evaluating bioeconomic tradeoffs of fishing reserves via spatial optimization. Marine Policy.

Cite DOI

Mora C, Spirandelli D, Franklin EC, Lynham J, Kantar MB, Miles W, Smith CZ+, Freel K, Moy J+, Louis LV+, Barba EW+, Bettinger K, Frazier AG, Colburn IX JF+, Hanasaki N, Hawkins E, Hirabayashi Y, Knorr W, Little CM, Emanuel K, Sheffield J, Patz JA, Hunter CL (2018). Broad threat to humanity from cumulative climate hazards intensified by greenhouse gas emissions. Nature Climate Change 8: 1062-1071.

Cite DOI

Mora C, Rollins R+, Taladay K+, Kantar MB, Chock MK+, Shimada M+, Franklin EC (2018). Bitcoin emissions alone could push global warming above 2°C. Nature Climate Change 8: 931-933.

Cite DOI

Geronimo, R+, Franklin EC, Brainard RE, Elvidge CD, Santos MD, Venegas R, Mora C (2018). Mapping fishing activities and suitable fishing grounds using nighttime satellite images and maximum entropy modelling. Remote Sensing 10: 1604.

Cite DOI

Forsman ZH, Maurin P, Parry M, Chung A+, Sartor C, Hixon MA, Hughes K, Rodgers K, Knapp I, Gulko DA, Franklin EC, Del Rio Torres L, Chan NT, Wolke CS, Gates RD, Toonen RJ (2018). The First Hawai‘i Workshop For Coral Restoration & Nurseries. Marine Policy 96: 133-135.

Cite DOI

Counsell CWW+, Donahue MJ, Edwards K, Franklin EC, Hixon MA (2018). Variation in coral-associated cryptofaunal communities along spatial scales and environmental gradients. Coral Reefs 37: 827-840.

Cite DOI

Levy J+, Hunter C, Lukaczyk, Franklin EC (2018). Assessing the spatial distribution of coral bleaching using small unmanned aerial systems. Coral Reefs 37: 373-387.

Cite DOI

Grabowski TB, Franklin EC (2017). What can volunteer angler tagging data tell us about the status of the Giant Trevally (ulua aukea) Caranx ignobilis fishery in Hawaii: revisiting data collected during Hawaii’s Ulua and Papio Tagging Project 2000-2016. U.S. Department of Interior, Fish and Wildlife Service, Cooperator Science Series FWS/CSS-126-2017, Washington, D.C.

Cite

Franklin EC (2017). Vagrancy in paradise: documentation of the chevron butterflyfish Chaetodon trifascialis in Kaneohe Bay, Oahu, Hawaiian Islands. Marine Biodiversity Records 10:22.

Cite DOI

Longenecker K, Langston R, Bolick H, Crane M, Donaldson TJ, Franklin EC, Kelokelo M, Kondio U, Potuku T (2017). Rapid reproductive analysis and length–weight relations for five species of coral-reef fishes from Papua New Guinea: Nemipterus isacanthus, Parupeneus barberinus, Kyphosus cinerascens, Ctenochaetus striatus, and Balistapus undulatus. Acta Ichthyologica et Piscatoria 47:107-124.

Cite DOI

Oyafuso ZS*, Drazen JC, Moore CH, Franklin EC (2017). Habitat-based species distribution modelling of the Hawaiian deepwater snapper-grouper complex. Fisheries Research 195: 19-27.

Cite DOI

Winston MS*, Taylor B, Franklin EC (2017). Intraspecific variability in the life history of endemic coral reef fishes between photic and mesophotic populations. Coral Reefs 36: 663-674.

Cite DOI

Kapur MR*, Franklin EC (2017). Predicting climate impacts on tropical fisheries: are contemporary spatial management strategies sufficient? Canadian Journal of Fisheries and Aquatic Sciences.

Cite DOI

Franklin EC (2016). Western Pacific Stock Assessment Review: Benchmark Review of the 2016 Stock Assessment of the Main Hawaiian Islands Reef-Associated Fish, Consensus Review Panel Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 26 pp.

Cite

Franklin EC (2016). Western Pacific Stock Assessment Review: Benchmark Review of the Stock Assessment of the Coral Reef Fishes of Guam, 2017, Individual Reviewer Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 26 pp.

Cite

Franklin EC (2016). Future Coral Reef Community Projections of DOI-Managed Coastal Assets in the Hawaiian Islands. Award #G13AC000395.

Cite

Veazey LM+, Franklin EC, Kelley C, Rooney J, Frazer NL, Toonen RJ (2016). The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands. PeerJ 4:e2189.

Cite DOI

Selkoe KA, Gaggiotti OE, Donovan MK+, Treml EA, Wren JLK+, Hawai‘i Reef Connectivity Consortium†, Toonen RJ (2016). The DNA of coral reef biodiversity – predicting and protecting genetic diversity of reef assemblages. Proceedings of the Royal Society B 283: 20160354.

Cite DOI

Oyafuso ZS*, Toonen RJ, Franklin EC (2016). Temporal and spatial trends in prey diversity of wahoo (Acanthocybium solandri): A diet analysis from the central North Pacific using visual and DNA bar-coding techniques. Journal of Fish Biology 88:1501-1523.

Cite DOI

Madin JS, Andreasen M, Bridge T, Connolly SR, Darling E, Diaz M, Falster D, Franklin EC, Gates RD, Hoogenboom MO, Huang D, Keith SA, Kuo CY, Lovelock CE, Luiz O, Martinelli J, Mizere T, Pandolfi JM, Pochon X, Putnam HM, Roberts TE, Stat M, Baird AH (2016). The Coral Trait Database. Nature Scientific Data 3:160017.

Cite DOI

Franklin EC, Chaloupka M, Kobayashi DR (2015). WPSAR Tier 3 Panel Review of Stock Assessment Updates of the Bottomfish Management Unit Species of American Samoa, the Commonwealth of the Northern Mariana Islands, and Guam in 2015 Using Data through 2013, Panel Summary Report. Report to Western Pacific Regional Fishery Management Council, NOAA Fisheries PIFSC, NOAA Fisheries PIRO. 15 pp.

Cite

Franklin EC, Dow AR (2014). Annotated bibliography of scientific literature for coral reef ecosystem management unit species. Report to Western Pacific Regional Fishery Management Council. Contract 14-SFFIII-05, 461 p.

Cite

Edmunds PJ, Adjeroud M, Baskett ML, Baums IB, Budd AF, Carpenter RC, Fabina NS, Fan T-Y, Franklin EC, Gross K, Han X, Jacobson L, Klaus JS, McClanahan TR, O’Leary JK, van Oppen MJH, Pochon X, Putnam HM, Smith TB, Stat M, Sweatman H, van Woesik R, Gates RD (2014). Persistence and change in community composition of reef corals through present, past and future climates. PLoS ONE 9(10): e107525.

Cite DOI

Ault JS, Smith SG, Browder J, Nuttle W, Franklin EC, DiNardo GT, Bohnsack JA (2014). Indicators for assessing the ecological dynamics and sustainability of southern Florida's coral reef and coastal fisheries. Ecological Indicators 44:164-172.

Cite DOI

Baums IB, Godwin LS, Franklin EC, Carlon DB, Toonen RJ (2014). Discordant population expansions in four species of coral-associated, Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea level change. Journal of Biogeography 41: 339-352.

Cite DOI

Fabina NS, Putnam HM, Franklin EC, Stat M, Gates RD (2013). Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Global Change Biology 19: 3306–3316.

Cite DOI

Bird CE, Franklin EC, Smith CM, Toonen RJ (2013). Between tide and wave marks: a unifying model of physical zonation on littoral shores. PeerJ 1:e154.

Cite DOI

Farmer NA, Ault JS, Smith SG, Franklin EC (2013). Methods for assessment of short-term coral reef fish movements within an acoustic array. Movement Ecology 2013:1-7.

Cite DOI

Franklin EC, Jokiel PL, Donahue MJ (2013). Predictive modeling of coral distribution and abundance in the Hawaiian Islands. Marine Ecology Progress Series 481:121-132.

Cite DOI

Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RD (2013). The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution 3:1317-1329.

Cite DOI

Brainard RE, Asher J, Blyth-Skyrme V, Coccagna EF, Dennis K, Donovan MK, Gove JM, Kenyon J, Looney EE, Miller JE, Timmers MA, Vargas-Ángel B, Vroom PS, Vetter O, Zgliczynski B, Acoba T, DesRochers A, Dunlap MJ, Franklin EC, Fisher-Pool PI, Braun CL, Richards BL, Schopmeyer SA, Schroeder RE, Toperoff A, Weijerman M, Williams I, Withall RD (2012). Coral reef ecosystem monitoring report of the Mariana Archipelago: 2003–2007. NOAA Fisheries, Pacific Islands Fisheries Science Center, PIFSC Special Publication, SP-12-01, 1019 p.

Cite

Fabina NS, Putnam HM, Franklin EC, Stat M, Gates RD (2012). Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. PLoS ONE 7(9): e44970.

Cite DOI

Heron SF, Maynard J, Willis B, Christensen T, Harvell D, Vargas-Angel B, Beeden R, Sziklay J, Aeby G, Franklin EC, and 8 others (2012). Developments in understanding relationships between environmental conditions and coral disease. Proc 12th Int’l Coral Reef Symposium, Cairns, Australia. 16B:4.

Cite

van Woesik R, Franklin EC, O’Leary J, McClanahan TR, Klaus JS, Budd AF (2012). Hosts of the Plio-Pleistocene past reflect modern-day coral vulnerability. Proceedings of the Royal Society B.

Cite DOI

Franklin EC, Stat M, Pochon X, Putnam HM, Gates RD (2012). GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources 12(2): 369-373.

Cite DOI

Ault JS, Franklin EC (2011). Fisheries resource status and management alternatives for the southeast Florida Region. Report to Florida DEP. Miami Beach, FL. Pp 105.

Cite

Franklin EC, Stat M, Pochon X, Putnam HM, Gates RD (2011). "Rapid Development of a Hybrid Web Application for Synthesis Science of Symbiodinium with Google Apps." In Jones, MB, Gries C (eds.) Proceedings of Environmental Information Management Conference 2011 (EIM 2011), Sep 28-29, 2011, UCSB, California, pp 44-48.

Cite DOI

Longenecker K, Chan Y, Franklin EC (2011). Relationships between the length of select head bones and body size for some Hawaiian parrotfishes (subfamily Scarinae). Bishop Museum Occasional Papers 111:13-26.

Cite

Aeby GS, Williams GJ, Franklin EC, Kenyon J, Cox EF, Coles S, Work TM (2011). Patterns of coral disease across the Hawaiian Archipelago: relating disease to environment. PLoS ONE 6(5): e20370.

Cite DOI

Aeby GS, Williams GJ, Franklin EC, Haapkyla J, Harvell CD, Neale S, Page CA, Raymundo L, Vargas-Angel B, Willis BL, Work TM, Davy SK (2011). Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE 6(2): e16887.

Cite DOI

Carvahlo K, Franklin EC (2010). "Stakeholder involvement case study: Hawaiian Islands Humpback Whales National Marine Sanctuary" in Lindholm J, Pavia R (eds). 2010. Examples of ecosystem-based management in national marine sanctuaries: moving from theory to practice. Marine Sanctuaries Conservation Series ONMS-10-02. USDOC, NOAA, ONMS, Silver Spring, MD. 33 pp.

Cite

Franklin EC (2010). Marine landscape ecology of coral reefs emerges from developments in seafloor mapping, GPS, and GIS. Pp 193-204 in Breman J, Ocean Globe. ESRI Press: Redlands, CA.

Cite

Concepcion GT, Kahng SE, Crepeau MW, Franklin EC, Coles SL, Toonen RJ (2010). Resolving natural ranges and marine invasions in a globally distributed octocoral (genus Carijoa). Marine Ecology Progress Series 401:113-127.

Cite DOI

Franklin EC, Dow A, Brong C, Craig M (2009). Length-weight and length-length relationships of three endemic butterflyfish species (Chaetodontidae) from coral reefs of the Northwestern Hawaiian Islands, USA. Journal of Applied Ichthyology 25(5):616-617. doi:10.1111/j.1439-0426.2009.01281.x

Cite DOI

Selkoe KA, Halpern BS, Ebert CM, Franklin EC, Selig ER, Casey KS, Bruno J, Toonen RJ (2009). A map of human impacts to a “pristine” coral reef ecosystem, the Papahanaumokuakea Marine National Monument. Coral Reefs 28(3):635-650. doi:10.1007/s00338-009-0490-z

Cite DOI

Friedlander A, Aeby G, Balwani S, Bowen B, Brainard R, Clark A, Kenyon J, Maragos J, Meyer C, Vroom P, Zamzow J, DeMartini E, Franklin EC, and 19 others (2008). The State of Coral Reef Ecosystems of the Northwestern Hawaiian Islands. pp. 263-306. In Waddell JE, Clarke AM (eds.) The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2008. NOAA Technical Memorandum NOS NCCOS 73. NOAA/NCCOS Center for Coastal Monitoring and Assessment’s Biogeography Team. Silver Spring, MD. 569 pp.

Cite

Hudson JH, Schittone J, Anderson J, Franklin EC, Stratton A (2008). M/V Alec Owen Maitland Coral Reef Restoration Monitoring Report, Monitoring Events 2004-2007. Florida Keys National Marine Sanctuary Monroe County, Florida. Marine Sanctuaries Conservation Series NMSP-08-01. U.S. Dept. of Commerce, NOAA, NMSP, Silver Spring, MD. 34 pp.

Cite

Franklin EC (2008). An assessment of vessel traffic patterns in the Northwestern Hawaiian Islands between 1994-2004. Marine Pollution Bulletin 56:150-153.

Cite DOI

Franklin EC, Hudson JH, Anderson J, Schittone J (2006). M/V Jacquelyn L Coral Reef Restoration Monitoring Report, Monitoring Events 2004-2005. Florida Keys National Sanctuary Monroe County, Florida. Marine Sanctuaries Conservation Series NMSP-06-09. USDOC, NOAA, NMSP, Silver Spring, MD. 25 pp.

Cite

Schittone J, Franklin EC, Hudson JH, Anderson J (2006). M/V Connected Coral Reef Restoration Monitoring Report, Monitoring Events 2004-2005. Florida Keys National Sanctuary Monroe County, Florida. Marine Sanctuaries Conservation Series NMSP-06-10. USDOC, NOAA, NMSP, Silver Spring, MD. 25 pp.

Cite

Hudson JH, Franklin EC (2006). Structural Stabilization of a Large Montastrea faveolata (Ellis and Solander, 1786) Colony Damaged by Vessel Impact. Caribbean Journal of Science 42(2):252-254.

Cite

Hudson JH, Franklin EC (2006). Coral reef restoration of a storm-disturbed vessel grounding site in the Florida Keys National Marine Sanctuary, USA. In: Proceedings of the 10th International Coral Reef Symposium, Okinawa, Japan, pp 1631-1636.

Cite

Franklin EC, Hudson JH, Anderson J (2005). M/V Wave Walker Coral Reef Restoration Monitoring Report, Monitoring Events 2004. Florida Keys National Sanctuary Monroe County, Florida. Marine Sanctuaries Conservation Series NMSP-06-08. USDOC, NOAA, NMSP, Silver Spring, MD. 15 pp.

Cite

Hudson JH, Franklin EC (2005). Structural Reef Restoration and Coral Transplantation to the R/V Columbus Iselin Grounding Site in the Florida Keys National Marine Sanctuary. In: Proceedings of the OCEANS 2005 Americas MTS/IEEE Conference, Washington, DC, September 19-23, 2005.

Cite DOI

Franklin EC (2004). Habitat-based assessment of the Florida Marine Aquaria Fishery with application to Gray Angelfish. MS thesis, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Coral Gables, Florida.

Cite

Ault JS, Zurcher N, Franklin EC, Smith SG, Luo J (2004). A strategy for managing marine ecological resources in Dry Tortugas National Park. Contract NPS CESU Grant No. NPS CA H5000 00 B494. 74 pp. Available from: JS Ault, University of Miami. Sponsored by National Park Service.

Cite

Ault JS, Franklin EC, Smith SG (2003). Florida gray angelfish fishery stock assessment. Miami: University of Miami. Contract FFWCC-617573. 89 pp. Available from: JS Ault, University of Miami. Sponsored by Florida Fish & Wildlife Conservation Commission.

Cite

Ault JS, Smith SG, Diaz G, Franklin EC (2003). Florida hogfish fishery stock assessment. Miami: University of Miami. Contract FFWCC-617573. 85 pp. Available from: JS Ault, University of Miami. Sponsored by Florida Fish & Wildlife Conservation Commission.

Cite

Ault JS, Smith SG, Franklin EC, Luo J, Bohnsack JA (2003). Sampling design analysis for coral reef fish stock assessment in Dry Tortugas National Park. Contract NPS H5000000494-0012. 93 pp. with appendices. Available from: JS Ault, University of Miami. Sponsored by National Park Service.

Cite

Franklin EC, Ault JS, Smith SG, Luo J, Meester GA, Diaz GA, Chiappone M, Swanson DW, Miller SL, Bohnsack JA (2003). Benthic habitat mapping in the Tortugas region, Florida. Marine Geodesy 26(1-2):19-34.

Cite DOI

Ault JS, Smith SG, Meester GA, Luo J, Franklin EC, Bohnsack JA, Harper DE, McClellan DB, Miller SL, Chiappone M, Swanson DW (2002). Synoptic habitat and reef fish surveys support establishment of marine reserves in Dry Tortugas, Florida USA. Reef Encounter 31:22-23.

Cite

Franklin EC, Ault JS, Smith SG (2002). Utilization of a GIS in a fisheries assessment and management system. In: J. Breman (ed) Marine Geography: GIS for the Oceans and the Seas. Redlands, CA: ESRI Press.

Cite

Ault JS, Smith SG, Luo J, Meester GA, Bohnsack JA, Miller SL, Harper D, Franklin EC, Swanson DW, Chiappone M, McClellan DB, Fischel P, Schmidt T (2001). Baseline Multispecies Coral Reef Fish Stock Assessments for the Dry Tortugas. Miami: University of Miami. Contract NPS No. CA5280-00-032 and FKNMS No. NA67RJ0149. 123 pp. Available from: JS Ault, University of Miami. Sponsored by National Park Service and Florida Keys National Marine Sanctuary.

Cite

Miller SL, Swanson DW, Chiappone M, Ault JS, Smith SG, Meester GA, Luo J, Franklin EC, Bohnsack JA, Harper DE, McClellan DB (2001). An extensive deep reef terrace on the Tortugas Bank, Florida Keys National Marine Sanctuary. Coral Reefs 20:299-300.

Cite

[NOAA] National Oceanic and Atmospheric Administration (2000). Tortugas Ecological Reserve: Final Supplemental Environmental Impact Statement/Final Supplemental Management Plan. 315 pp.

Cite

Franklin EC (1998). Battling a coral disease in the Florida Keys National Marine Sanctuary. Oceanic Resources Foundation Newsletter. Winter 1998.

Cite